Commits · 46149e799c0330b274fb1db725e1be3feda216e1 · ibmc-meg / evoppi-predicted-interactomes

Oct 12, 2022
- Adds orthologs database name to the reports directory to avoid overwriting DIOPT/Ensembl files · 46149e79
  Hugo López-Fernández authored Oct 12, 2022
  
  46149e79
- Adds support for Danio_rerio · b634ed7c
  Hugo López-Fernández authored Oct 12, 2022
  
  b634ed7c
- Creates DIOPT and Ensembl predicted interactomes for all model files in the same directory · 45a146e9
  Hugo López-Fernández authored Oct 12, 2022
  
  45a146e9
Oct 11, 2022

Adapts scripts to file names without PMIDs · 6bb3b557
Hugo López-Fernández authored Oct 11, 2022

6bb3b557

Improves scripts and uses remote mapping mode · f3173b42

Hugo López-Fernández authored Oct 11, 2022

Improves the main scripts (create-predicted-*.sh) so that they can be executed from
external directories. Also, uses the --only-remote-mode when using the EvoPPI
interactomes parser JAR to map gene identifiers.

f3173b42

Oct 09, 2022
- Adds tests for the creation of predicted interactomes from models · 92885c41
  Hugo López-Fernández authored Oct 09, 2022
  
  92885c41
- Fixes a bug when mapping the interactome · f2cad43a
  Hugo López-Fernández authored Oct 09, 2022
  
  f2cad43a
Oct 07, 2022
- Adds script to create predicted interactomes for patient/mutant data from Ensembl · 1c9e6299
  Hugo López-Fernández authored Oct 07, 2022
  
  1c9e6299
- Adds cleanup · 9153b5ad
  Hugo López-Fernández authored Oct 07, 2022
  
  9153b5ad
- Refactors the script to create predicted interactomes from patient/mutant predictomes using DIOPT · 3a394310
  Hugo López-Fernández authored Oct 07, 2022
  
  3a394310
- Minor fixes · ec63d357
  Hugo López-Fernández authored Oct 07, 2022
  
  ec63d357
- Adds predicted interactome creation tests · d77f05cd
  Hugo López-Fernández authored Oct 07, 2022
  
  d77f05cd
Oct 06, 2022
- Refactors DIOPT script · 8015e86d
  Hugo López-Fernández authored Oct 06, 2022
  
  8015e86d
- Refactors Ensembl script to have a set of reutilizable functions · f7d5b3e1
  Hugo López-Fernández authored Oct 06, 2022
  
  f7d5b3e1
- Fixes cache of unmapped IDs in Ensembl · af78f1ae
  Hugo López-Fernández authored Oct 06, 2022
  
  af78f1ae
Oct 05, 2022
- Skips creation of existing target files · 10383138
  Hugo López-Fernández authored Oct 05, 2022
  
  10383138
Oct 04, 2022
- Adds initial versions of Ensembl predictome creation scripts · c01bf4fb
  Hugo López-Fernández authored Oct 04, 2022
  
  c01bf4fb
- Creates all DIOPT predicted interactomes and skips existing target files · b2af1935
  Hugo López-Fernández authored Oct 04, 2022
  
  b2af1935
- Adds cache of unmapped IDs to avoid querying them repeatedly · 75cca81a
  Hugo López-Fernández authored Oct 04, 2022
  
  75cca81a
Oct 03, 2022
- Adds new scripts to create predicted interactomes for patient/mutant interactomes · 0fa391ce
  Hugo López-Fernández authored Oct 03, 2022
  
  0fa391ce
Sep 28, 2022
- Allow setting the columns to map · 00701343
  Hugo López-Fernández authored Sep 28, 2022
  
  00701343
Sep 27, 2022
- Initial commit of the project · ea18a032
  Hugo López-Fernández authored Sep 27, 2022
  
  ea18a032