As the name of the species and models are long, the size of the combo
box to select them has been increased so that their complete name can
be seen.

Now the name specifies that the column contains the number of Fbox
in the SRNase regions, explaining, this way, the reason why it is
empty in non-SRNase files.

Some minor code refactors have been done in the family tree view
compoment.

Now, the labels are next to the root nodes instead of being aligned
in a single column.

The pagination and the predicted/putative toggle were not working.

This commit fixes both errors.

The pagination was not working because paginator and sort were
associated to the datasource before the were initialized.

This commit fixes this error and now pagination is working
properly.

Changes the project version to prepare the release.

Code has been reviewed to solve several errors, simplify some parts
and to improve some components.

Until now, when a family was selected in the autocomplete of the
search box (top right of the page) it was just shown in the search
box and, then, the user must press enter to access the family.

Now, the family is immediately shown when it is selected in the
autocomplete.

The view button was not correctly visualized, as there was more space
in the right side of the icon than in the left side. This has been
fixed by changing the type of the button to mat-icon-button.

In order to set a height to the Newick tree, the number of nodes are
calculated and multiplied by the node size. This adjust the size of
the canvas to the actual tree.

The errors were introduced during the Angular upgrade done.

A new configuration has been added to build a version of the
application specifically configured to be used in an embedded way
when the backend is executed with the --with-web option.

This version can be build using the "npm run build-embedded" command.

The results view now display a resume of the predictive and putative info about SKP1

Now all files are accessible via link from the view

The reference to files in the backend are now done using links.

First test to show files in results component

La aplicación ahora recibe contenido gzip y lo descomprime en un objeto SLFDatabase

The description of the project is added in the tree view, the logic
of the dialogs is modified so that it works generically with nodes
with two or more families and the autocomplete in the search is added

The DataService.getDatabase() method should not be used by the
components or other classes, as returning the whole database can
only be done with the current database desing, limiting the
creation of other implementations of this service.

Therefore, this method has been made private, in order to avoid
errors.

The home component has been renamed to families-tree, as it only
contains the Newick tree.

Code has been cleaned and reformatted to unify code formating, as
some format elements were not consistent (e.g. mixed single and
double quotes, missing ending semicolons, etc.).

aggonzalez authored Apr 28, 2022 and Miguel Reboiro-Jato committed May 07, 2022

The color are changed based on the existence of results for each
family.

aggonzalez authored Apr 20, 2022 and Miguel Reboiro-Jato committed May 07, 2022

The results view now has a paginated table.

In addition, the home view checks with the database if a family has
results when it is clicked and the family search field also checks if
the family searched exists and has results.

aggonzalez authored Apr 19, 2022 and Miguel Reboiro-Jato committed May 07, 2022

The family view now show the results table with pagination.

aggonzalez authored Apr 05, 2022 and Miguel Reboiro-Jato committed May 07, 2022

The database object now includes a name and description, and the
Newick tree.

This commit adapts the code to this change, using the database title
in the page header and taking the Newick tree from the database.

The species results view now correctly supports changing between
predicted and putative results in each row when both available.

Results view has been reviewed and simplified by delegating some of
the logic in the DataService and in a model class (SpeciesRow)
specific for the view.

A deep code review and refactorization has been made in order to
improve the application structure.

alexgomezg authored Mar 02, 2022 and Miguel Reboiro-Jato committed Mar 07, 2022

Basic views for home, family and species results have been added.